Get a specific evidence item metadata information

Retrieve metadata information for a specific evidence item from the CIViC DB

getEvidenceItemMetadata(id, type)

Arguments

id	Internal CIViC ID of the evidence item of interest
type	Type of metadata (comments, suggested_changes, revisions)

Value

An S3 Object of type civic_api containing the content, url, and response

Examples

getEvidenceItemMetadata(id = 1, type = "comments")
#> $content
#> list()
#> 
#> $url
#> [1] "https://civicdb.org/api/evidence_items/1/comments"
#> 
#> $response
#> Response [https://civicdb.org/api/evidence_items/1/comments]
#>   Date: 2019-09-03 16:44
#>   Status: 200
#>   Content-Type: application/json; charset=utf-8
#>   Size: 2 B
#> 
#> 
#> attr(,"class")
#> [1] "civic_api"
getEvidenceItemMetadata(id = 1, type = "revisions")
#> $content
#> $content[[1]]
#> $content[[1]]$id
#> [1] 228
#> 
#> $content[[1]]$action
#> [1] "create"
#> 
#> $content[[1]]$user
#> $content[[1]]$user$username
#> [1] "Admin"
#> 
#> 
#> $content[[1]]$created_at
#> [1] "2015-06-21T16:49:38.827Z"
#> 
#> $content[[1]]$changes
#> $content[[1]]$changes$description
#> [1] "JAK2 V617F is not associated with lymphoid leukemia (B-lineage ALL, T-ALL or CLL)."
#> 
#> $content[[1]]$changes$disease_id
#> [1] 1
#> 
#> $content[[1]]$changes$source_id
#> [1] 51
#> 
#> $content[[1]]$changes$variant_id
#> [1] 64
#> 
#> $content[[1]]$changes$rating
#> [1] 4
#> 
#> $content[[1]]$changes$status
#> [1] "accepted"
#> 
#> $content[[1]]$changes$remote_errors
#> NULL
#> 
#> $content[[1]]$changes$remote_ids
#> NULL
#> 
#> $content[[1]]$changes$variant_hgvs
#> [1] "9:5073770-5073770 (G->T)"
#> 
#> $content[[1]]$changes$drug_interaction_description
#> NULL
#> 
#> $content[[1]]$changes$evidence_level
#> [1] 1
#> 
#> $content[[1]]$changes$evidence_type
#> [1] 0
#> 
#> $content[[1]]$changes$variant_origin
#> [1] 0
#> 
#> $content[[1]]$changes$evidence_direction
#> [1] 0
#> 
#> $content[[1]]$changes$clinical_significance
#> [1] 5
#> 
#> $content[[1]]$changes$deleted
#> [1] FALSE
#> 
#> $content[[1]]$changes$deleted_at
#> NULL
#> 
#> 
#> $content[[1]]$diffs
#> $content[[1]]$diffs$description
#> $content[[1]]$diffs$description$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>JAK2 V617F is not associated with lymphoid leukemia (B-lineage ALL, T-ALL or CLL).</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$description$final
#> [1] "JAK2 V617F is not associated with lymphoid leukemia (B-lineage ALL, T-ALL or CLL)."
#> 
#> 
#> $content[[1]]$diffs$disease
#> $content[[1]]$diffs$disease$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>Lymphoid Leukemia</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$disease$final
#> [1] "Lymphoid Leukemia"
#> 
#> 
#> $content[[1]]$diffs$source
#> $content[[1]]$diffs$source$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>Levine et al., 2005, Blood - (PubMed)</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$source$final
#> [1] "Levine et al., 2005, Blood - (PubMed)"
#> 
#> 
#> $content[[1]]$diffs$variant
#> $content[[1]]$diffs$variant$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>V617F</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$variant$final
#> [1] "V617F"
#> 
#> 
#> $content[[1]]$diffs$rating
#> $content[[1]]$diffs$rating$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>4</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$rating$final
#> [1] 4
#> 
#> 
#> $content[[1]]$diffs$status
#> $content[[1]]$diffs$status$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>accepted</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$status$final
#> [1] "accepted"
#> 
#> 
#> $content[[1]]$diffs$remote_errors
#> $content[[1]]$diffs$remote_errors$diff
#> [1] "<div class=\"diff\"></div>"
#> 
#> $content[[1]]$diffs$remote_errors$final
#> NULL
#> 
#> 
#> $content[[1]]$diffs$remote_ids
#> $content[[1]]$diffs$remote_ids$diff
#> [1] "<div class=\"diff\"></div>"
#> 
#> $content[[1]]$diffs$remote_ids$final
#> NULL
#> 
#> 
#> $content[[1]]$diffs$variant_hgvs
#> $content[[1]]$diffs$variant_hgvs$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>9:5073770-5073770 (G-&gt;T)</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$variant_hgvs$final
#> [1] "9:5073770-5073770 (G->T)"
#> 
#> 
#> $content[[1]]$diffs$drug_interaction_description
#> $content[[1]]$diffs$drug_interaction_description$diff
#> [1] "<div class=\"diff\"></div>"
#> 
#> $content[[1]]$diffs$drug_interaction_description$final
#> NULL
#> 
#> 
#> $content[[1]]$diffs$evidence_level
#> $content[[1]]$diffs$evidence_level$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>1</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$evidence_level$final
#> [1] 1
#> 
#> 
#> $content[[1]]$diffs$evidence_type
#> $content[[1]]$diffs$evidence_type$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>0</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$evidence_type$final
#> [1] 0
#> 
#> 
#> $content[[1]]$diffs$variant_origin
#> $content[[1]]$diffs$variant_origin$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>0</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$variant_origin$final
#> [1] 0
#> 
#> 
#> $content[[1]]$diffs$evidence_direction
#> $content[[1]]$diffs$evidence_direction$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>0</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$evidence_direction$final
#> [1] 0
#> 
#> 
#> $content[[1]]$diffs$clinical_significance
#> $content[[1]]$diffs$clinical_significance$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>5</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$clinical_significance$final
#> [1] 5
#> 
#> 
#> $content[[1]]$diffs$deleted
#> $content[[1]]$diffs$deleted$diff
#> [1] "<div class=\"diff\">\n  <ul>\n    <li class=\"ins\"><ins>false</ins></li>\n  </ul>\n</div>\n"
#> 
#> $content[[1]]$diffs$deleted$final
#> [1] FALSE
#> 
#> 
#> $content[[1]]$diffs$deleted_at
#> $content[[1]]$diffs$deleted_at$diff
#> [1] "<div class=\"diff\"></div>"
#> 
#> $content[[1]]$diffs$deleted_at$final
#> NULL
#> 
#> 
#> 
#> 
#> 
#> $url
#> [1] "https://civicdb.org/api/evidence_items/1/revisions"
#> 
#> $response
#> Response [https://civicdb.org/api/evidence_items/1/revisions]
#>   Date: 2019-09-03 16:44
#>   Status: 200
#>   Content-Type: application/json; charset=utf-8
#>   Size: 3.93 kB
#> 
#> 
#> attr(,"class")
#> [1] "civic_api"